| Test case: | [spack] test build |
|---|
| Outcome: | Failed |
|---|
| Duration: | 0.0 sec |
|---|
| Failed | not ok 3 [spack] test build |
|---|
1..4
ok 1 [spack] check for RPM
duration_ms: 1.340
ok 2 [spack] add compiler
duration_ms: 3.012
not ok 3 [spack] test build
# (in test file spack, line 30)
# `spack install bats' failed with status 3
# ==> Bootstrapping clingo from pre-built binaries
# ==> Bootstrapping clingo from pre-built binaries
# ==> Bootstrapping clingo from sources
# ==> Installing zlib-1.2.13-wlhiqq4o2mnuccmdudxndqmd2r75qxc6
# ==> No binary for zlib-1.2.13-wlhiqq4o2mnuccmdudxndqmd2r75qxc6 found: installing from source
# ==> Warning: download_tarball() was unable to download clingo-bootstrap@spack%gcc@10.2.1~docs~ipo+python+static_libstdcpp build_type=Release arch=linux-centos7-aarch64 ^python@3.6%gcc@10.2.1+bz2+ctypes+dbm~debug+ensurepip+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib arch=linux-centos7-aarch64 from any configured mirrors
# ==> Fetching https://zlib.net/fossils/zlib-1.2.13.tar.gz
# ==> No patches needed for zlib
# ==> zlib: Executing phase: 'edit'
# ==> zlib: Executing phase: 'build'
# ==> zlib: Executing phase: 'install'
# ==> zlib: Successfully installed zlib-1.2.13-wlhiqq4o2mnuccmdudxndqmd2r75qxc6
# Fetch: 23.92s. Build: 1.51s. Total: 25.43s.
# [+] /root/.spack/bootstrap/store/linux-opensuse_leap15-aarch64/gcc-7.5.0/zlib-1.2.13-wlhiqq4o2mnuccmdudxndqmd2r75qxc6
# ==> Installing gnuconfig-2021-08-14-cbcw5tilwxazzr2laoqrbtwbwx7ydsir
# ==> No binary for gnuconfig-2021-08-14-cbcw5tilwxazzr2laoqrbtwbwx7ydsir found: installing from source
# ==> Fetching https://mirror.spack.io/_source-cache/archive/69/69b6d2868e70167ba1bdb9030b49beeb20f00b37e30825e83fd04291d96bc5f7.tar.gz
# ==> No patches needed for gnuconfig
# ==> gnuconfig: Executing phase: 'install'
# ==> gnuconfig: Successfully installed gnuconfig-2021-08-14-cbcw5tilwxazzr2laoqrbtwbwx7ydsir
# Fetch: 1.68s. Build: 0.11s. Total: 1.79s.
# [+] /root/.spack/bootstrap/store/linux-opensuse_leap15-aarch64/gcc-7.5.0/gnuconfig-2021-08-14-cbcw5tilwxazzr2laoqrbtwbwx7ydsir
# ==> Installing ca-certificates-mozilla-2022-10-11-zkm3s5n7chyqkxeinng4k25gckmj23pt
# ==> No binary for ca-certificates-mozilla-2022-10-11-zkm3s5n7chyqkxeinng4k25gckmj23pt found: installing from source
# ==> Fetching https://mirror.spack.io/_source-cache/archive/2c/2cff03f9efdaf52626bd1b451d700605dc1ea000c5da56bd0fc59f8f43071040
# ==> No patches needed for ca-certificates-mozilla
# ==> ca-certificates-mozilla: Executing phase: 'install'
# ==> ca-certificates-mozilla: Successfully installed ca-certificates-mozilla-2022-10-11-zkm3s5n7chyqkxeinng4k25gckmj23pt
# Fetch: 1.53s. Build: 0.05s. Total: 1.58s.
# [+] /root/.spack/bootstrap/store/linux-opensuse_leap15-aarch64/gcc-7.5.0/ca-certificates-mozilla-2022-10-11-zkm3s5n7chyqkxeinng4k25gckmj23pt
# ==> Installing re2c-2.2-lomyu62c54ium6zn3fvrobyu43z6l2x5
# ==> No binary for re2c-2.2-lomyu62c54ium6zn3fvrobyu43z6l2x5 found: installing from source
# ==> Fetching https://mirror.spack.io/_source-cache/archive/0f/0fc45e4130a8a555d68e230d1795de0216dfe99096b61b28e67c86dfd7d86bda.tar.xz
# ==> No patches needed for re2c
# ==> re2c: Executing phase: 'configure'
# ==> re2c: Executing phase: 'build'
# ==> re2c: Executing phase: 'install'
# ==> re2c: Successfully installed re2c-2.2-lomyu62c54ium6zn3fvrobyu43z6l2x5
# Fetch: 2.09s. Build: 14.21s. Total: 16.30s.
# [+] /root/.spack/bootstrap/store/linux-opensuse_leap15-aarch64/gcc-7.5.0/re2c-2.2-lomyu62c54ium6zn3fvrobyu43z6l2x5
# [+] /usr (external python-3.6-6x6x3xzlm36v5ag2juq2c2snvmpse4s3)
# ==> Installing berkeley-db-18.1.40-dt3y7pjcofpwvdmn3vyoe7qydft2pirh
# ==> No binary for berkeley-db-18.1.40-dt3y7pjcofpwvdmn3vyoe7qydft2pirh found: installing from source
# ==> Fetching https://mirror.spack.io/_source-cache/archive/0c/0cecb2ef0c67b166de93732769abdeba0555086d51de1090df325e18ee8da9c8.tar.gz
# ==> Applied patch /opt/ohpc/admin/spack/0.19.2/var/spack/repos/builtin/packages/berkeley-db/drop-docs.patch
# ==> Applied patch /opt/ohpc/admin/spack/0.19.2/var/spack/repos/builtin/packages/berkeley-db/tls.patch
# ==> Ran patch() for berkeley-db
# ==> berkeley-db: Executing phase: 'autoreconf'
# ==> berkeley-db: Executing phase: 'configure'
# ==> berkeley-db: Executing phase: 'build'
# ==> berkeley-db: Executing phase: 'install'
# ==> berkeley-db: Successfully installed berkeley-db-18.1.40-dt3y7pjcofpwvdmn3vyoe7qydft2pirh
# Fetch: 3.86s. Build: 24.52s. Total: 28.38s.
# [+] /root/.spack/bootstrap/store/linux-opensuse_leap15-aarch64/gcc-7.5.0/berkeley-db-18.1.40-dt3y7pjcofpwvdmn3vyoe7qydft2pirh
# ==> Installing libsigsegv-2.13-hztyp75j6lzq5xguc4njgymrgejsf2bj
# ==> No binary for libsigsegv-2.13-hztyp75j6lzq5xguc4njgymrgejsf2bj found: installing from source
# ==> Fetching https://mirror.spack.io/_source-cache/archive/be/be78ee4176b05f7c75ff03298d84874db90f4b6c9d5503f0da1226b3a3c48119.tar.gz
# ==> No patches needed for libsigsegv
# ==> libsigsegv: Executing phase: 'autoreconf'
# ==> libsigsegv: Executing phase: 'configure'
# ==> libsigsegv: Executing phase: 'build'
# ==> libsigsegv: Executing phase: 'install'
# ==> libsigsegv: Successfully installed libsigsegv-2.13-hztyp75j6lzq5xguc4njgymrgejsf2bj
# Fetch: 1.88s. Build: 6.56s. Total: 8.45s.
# [+] /root/.spack/bootstrap/store/linux-opensuse_leap15-aarch64/gcc-7.5.0/libsigsegv-2.13-hztyp75j6lzq5xguc4njgymrgejsf2bj
# ==> Installing pkgconf-1.8.0-uzp5wq5f4tr57z74wc47bvs4gga7a3ci
# ==> No binary for pkgconf-1.8.0-uzp5wq5f4tr57z74wc47bvs4gga7a3ci found: installing from source
# ==> Fetching https://mirror.spack.io/_source-cache/archive/ef/ef9c7e61822b7cb8356e6e9e1dca58d9556f3200d78acab35e4347e9d4c2bbaf.tar.xz
# ==> No patches needed for pkgconf
# ==> pkgconf: Executing phase: 'autoreconf'
# ==> pkgconf: Executing phase: 'configure'
# ==> pkgconf: Executing phase: 'build'
# ==> pkgconf: Executing phase: 'install'
# ==> pkgconf: Successfully installed pkgconf-1.8.0-uzp5wq5f4tr57z74wc47bvs4gga7a3ci
# Fetch: 1.54s. Build: 5.59s. Total: 7.13s.
# [+] /root/.spack/bootstrap/store/linux-opensuse_leap15-aarch64/gcc-7.5.0/pkgconf-1.8.0-uzp5wq5f4tr57z74wc47bvs4gga7a3ci
# ==> Installing libiconv-1.16-j64pyvwlhhiq55dmmy5scg3roc73tmwz
# ==> No binary for libiconv-1.16-j64pyvwlhhiq55dmmy5scg3roc73tmwz found: installing from source
# ==> Fetching https://mirror.spack.io/_source-cache/archive/e6/e6a1b1b589654277ee790cce3734f07876ac4ccfaecbee8afa0b649cf529cc04.tar.gz
# ==> No patches needed for libiconv
# ==> libiconv: Executing phase: 'autoreconf'
# ==> libiconv: Executing phase: 'configure'
# ==> libiconv: Executing phase: 'build'
# ==> libiconv: Executing phase: 'install'
# ==> libiconv: Successfully installed libiconv-1.16-j64pyvwlhhiq55dmmy5scg3roc73tmwz
# Fetch: 2.67s. Build: 27.39s. Total: 30.05s.
# [+] /root/.spack/bootstrap/store/linux-opensuse_leap15-aarch64/gcc-7.5.0/libiconv-1.16-j64pyvwlhhiq55dmmy5scg3roc73tmwz
# ==> Installing ncurses-6.3-iarvkbty6eqe6xdvtsutuzk4f372v76k
# ==> No binary for ncurses-6.3-iarvkbty6eqe6xdvtsutuzk4f372v76k found: installing from source
# ==> Fetching https://mirror.spack.io/_source-cache/archive/97/97fc51ac2b085d4cde31ef4d2c3122c21abc217e9090a43a30fc5ec21684e059.tar.gz
# ==> No patches needed for ncurses
# ==> ncurses: Executing phase: 'autoreconf'
# ==> ncurses: Executing phase: 'configure'
# ==> ncurses: Executing phase: 'build'
# ==> ncurses: Executing phase: 'install'
# ==> ncurses: Successfully installed ncurses-6.3-iarvkbty6eqe6xdvtsutuzk4f372v76k
# Fetch: 2.25s. Build: 57.22s. Total: 59.47s.
# [+] /root/.spack/bootstrap/store/linux-opensuse_leap15-aarch64/gcc-7.5.0/ncurses-6.3-iarvkbty6eqe6xdvtsutuzk4f372v76k
# ==> Installing diffutils-3.8-nzc7ncqq2l7f4bkqq4nzaio6ubj4fkrt
# ==> No binary for diffutils-3.8-nzc7ncqq2l7f4bkqq4nzaio6ubj4fkrt found: installing from source
# ==> Fetching https://ftpmirror.gnu.org/diffutils/diffutils-3.8.tar.xz
# ==> No patches needed for diffutils
# ==> diffutils: Executing phase: 'autoreconf'
# ==> diffutils: Executing phase: 'configure'
# ==> diffutils: Executing phase: 'build'
# ==> diffutils: Executing phase: 'install'
# ==> diffutils: Successfully installed diffutils-3.8-nzc7ncqq2l7f4bkqq4nzaio6ubj4fkrt
# Fetch: 30.83s. Build: 33.40s. Total: 1m 4.23s.
# [+] /root/.spack/bootstrap/store/linux-opensuse_leap15-aarch64/gcc-7.5.0/diffutils-3.8-nzc7ncqq2l7f4bkqq4nzaio6ubj4fkrt
# ==> Installing readline-8.1.2-7ghchmymw62gh7yb4qkjqihy32bcwn3p
# ==> No binary for readline-8.1.2-7ghchmymw62gh7yb4qkjqihy32bcwn3p found: installing from source
# ==> Fetching https://mirror.spack.io/_source-cache/archive/75/7589a2381a8419e68654a47623ce7dfcb756815c8fee726b98f90bf668af7bc6.tar.gz
# ==> Ran patch() for readline
# ==> readline: Executing phase: 'autoreconf'
# ==> readline: Executing phase: 'configure'
# ==> readline: Executing phase: 'build'
# ==> readline: Executing phase: 'install'
# ==> readline: Successfully installed readline-8.1.2-7ghchmymw62gh7yb4qkjqihy32bcwn3p
# Fetch: 2.05s. Build: 9.20s. Total: 11.25s.
# [+] /root/.spack/bootstrap/store/linux-opensuse_leap15-aarch64/gcc-7.5.0/readline-8.1.2-7ghchmymw62gh7yb4qkjqihy32bcwn3p
# ==> Installing bzip2-1.0.8-puiizkmlrtagrhvrdssv3hajhz45s76n
# ==> No binary for bzip2-1.0.8-puiizkmlrtagrhvrdssv3hajhz45s76n found: installing from source
# ==> Fetching https://mirror.spack.io/_source-cache/archive/ab/ab5a03176ee106d3f0fa90e381da478ddae405918153cca248e682cd0c4a2269.tar.gz
# ==> Ran patch() for bzip2
# ==> bzip2: Executing phase: 'install'
# ==> bzip2: Successfully installed bzip2-1.0.8-puiizkmlrtagrhvrdssv3hajhz45s76n
# Fetch: 1.77s. Build: 2.81s. Total: 4.58s.
# [+] /root/.spack/bootstrap/store/linux-opensuse_leap15-aarch64/gcc-7.5.0/bzip2-1.0.8-puiizkmlrtagrhvrdssv3hajhz45s76n
# ==> Installing m4-1.4.19-ilazzu4duygwp7tilvsddiwc6ftkakdf
# ==> No binary for m4-1.4.19-ilazzu4duygwp7tilvsddiwc6ftkakdf found: installing from source
# ==> Fetching https://mirror.spack.io/_source-cache/archive/3b/3be4a26d825ffdfda52a56fc43246456989a3630093cced3fbddf4771ee58a70.tar.gz
# ==> Applied patch /opt/ohpc/admin/spack/0.19.2/var/spack/repos/builtin/packages/m4/checks-198.sysval.1.patch
# ==> Applied patch /opt/ohpc/admin/spack/0.19.2/var/spack/repos/builtin/packages/m4/checks-198.sysval.2.patch
# ==> Ran patch() for m4
# ==> m4: Executing phase: 'autoreconf'
# ==> m4: Executing phase: 'configure'
# ==> m4: Executing phase: 'build'
# ==> m4: Executing phase: 'install'
# ==> m4: Successfully installed m4-1.4.19-ilazzu4duygwp7tilvsddiwc6ftkakdf
# Fetch: 2.28s. Build: 39.72s. Total: 42.00s.
# [+] /root/.spack/bootstrap/store/linux-opensuse_leap15-aarch64/gcc-7.5.0/m4-1.4.19-ilazzu4duygwp7tilvsddiwc6ftkakdf
# ==> Installing gdbm-1.23-3hq3pb3nf2ux7eqhzlqsze33b5zuspfk
# ==> No binary for gdbm-1.23-3hq3pb3nf2ux7eqhzlqsze33b5zuspfk found: installing from source
# ==> Fetching https://mirror.spack.io/_source-cache/archive/74/74b1081d21fff13ae4bd7c16e5d6e504a4c26f7cde1dca0d963a484174bbcacd.tar.gz
# ==> No patches needed for gdbm
# ==> gdbm: Executing phase: 'autoreconf'
# ==> gdbm: Executing phase: 'configure'
# ==> gdbm: Executing phase: 'build'
# ==> gdbm: Executing phase: 'install'
# ==> gdbm: Successfully installed gdbm-1.23-3hq3pb3nf2ux7eqhzlqsze33b5zuspfk
# Fetch: 1.98s. Build: 9.42s. Total: 11.40s.
# [+] /root/.spack/bootstrap/store/linux-opensuse_leap15-aarch64/gcc-7.5.0/gdbm-1.23-3hq3pb3nf2ux7eqhzlqsze33b5zuspfk
# ==> Installing perl-5.36.0-qddz7z6mqqqyu3jaodjnjj2hb674dt46
# ==> No binary for perl-5.36.0-qddz7z6mqqqyu3jaodjnjj2hb674dt46 found: installing from source
# ==> Fetching https://mirror.spack.io/_source-cache/archive/e2/e26085af8ac396f62add8a533c3a0ea8c8497d836f0689347ac5abd7b7a4e00a.tar.gz
# ==> Fetching https://mirror.spack.io/_source-cache/archive/9d/9da50e155df72bce55cb69f51f1dbb4b62d23740fb99f6178bb27f22ebdf8a46.tar.gz
# ==> Moving resource stage
# source: /tmp/root/spack-stage/resource-cpanm-qddz7z6mqqqyu3jaodjnjj2hb674dt46/spack-src/
# destination: /tmp/root/spack-stage/spack-stage-perl-5.36.0-qddz7z6mqqqyu3jaodjnjj2hb674dt46/spack-src/cpanm/cpanm
# ==> Ran patch() for perl
# ==> perl: Executing phase: 'configure'
# ==> perl: Executing phase: 'build'
# ==> perl: Executing phase: 'install'
# ==> perl: Successfully installed perl-5.36.0-qddz7z6mqqqyu3jaodjnjj2hb674dt46
# Fetch: 4.88s. Build: 2m 19.86s. Total: 2m 24.74s.
# [+] /root/.spack/bootstrap/store/linux-opensuse_leap15-aarch64/gcc-7.5.0/perl-5.36.0-qddz7z6mqqqyu3jaodjnjj2hb674dt46
# ==> Installing openssl-1.1.1s-njbntxlbkuh5ebwhx3vhapir6jcalnmw
# ==> No binary for openssl-1.1.1s-njbntxlbkuh5ebwhx3vhapir6jcalnmw found: installing from source
# ==> Fetching https://mirror.spack.io/_source-cache/archive/c5/c5ac01e760ee6ff0dab61d6b2bbd30146724d063eb322180c6f18a6f74e4b6aa.tar.gz
# ==> Ran patch() for openssl
# ==> openssl: Executing phase: 'install'
# ==> openssl: Successfully installed openssl-1.1.1s-njbntxlbkuh5ebwhx3vhapir6jcalnmw
# Fetch: 2.63s. Build: 18.95s. Total: 21.57s.
# [+] /root/.spack/bootstrap/store/linux-opensuse_leap15-aarch64/gcc-7.5.0/openssl-1.1.1s-njbntxlbkuh5ebwhx3vhapir6jcalnmw
# ==> Installing bison-3.8.2-xj3atx6xvye3fedh4q3be636sjtvek3x
# ==> No binary for bison-3.8.2-xj3atx6xvye3fedh4q3be636sjtvek3x found: installing from source
# ==> Fetching https://mirror.spack.io/_source-cache/archive/06/06c9e13bdf7eb24d4ceb6b59205a4f67c2c7e7213119644430fe82fbd14a0abb.tar.gz
# ==> No patches needed for bison
# ==> bison: Executing phase: 'autoreconf'
# ==> bison: Executing phase: 'configure'
# ==> bison: Executing phase: 'build'
# ==> bison: Executing phase: 'install'
# ==> bison: Successfully installed bison-3.8.2-xj3atx6xvye3fedh4q3be636sjtvek3x
# Fetch: 2.33s. Build: 34.47s. Total: 36.80s.
# [+] /root/.spack/bootstrap/store/linux-opensuse_leap15-aarch64/gcc-7.5.0/bison-3.8.2-xj3atx6xvye3fedh4q3be636sjtvek3x
# ==> Installing cmake-3.24.3-t54p7p6vp37v7qxlbjb4sufndie75ext
# ==> No binary for cmake-3.24.3-t54p7p6vp37v7qxlbjb4sufndie75ext found: installing from source
# ==> Fetching https://mirror.spack.io/_source-cache/archive/b5/b53aa10fa82bff84ccdb59065927b72d3bee49f4d86261249fc0984b3b367291.tar.gz
# ==> No patches needed for cmake
# ==> cmake: Executing phase: 'bootstrap'
# ==> cmake: Executing phase: 'build'
# ==> cmake: Executing phase: 'install'
# ==> cmake: Successfully installed cmake-3.24.3-t54p7p6vp37v7qxlbjb4sufndie75ext
# Fetch: 2.31s. Build: 2m 59.18s. Total: 3m 1.49s.
# [+] /root/.spack/bootstrap/store/linux-opensuse_leap15-aarch64/gcc-7.5.0/cmake-3.24.3-t54p7p6vp37v7qxlbjb4sufndie75ext
# ==> Installing clingo-bootstrap-spack-svatlzarg3wjkzoxwocr5po5d4u3q4vl
# ==> No binary for clingo-bootstrap-spack-svatlzarg3wjkzoxwocr5po5d4u3q4vl found: installing from source
# ==> Ran patch() for clingo-bootstrap
# ==> clingo-bootstrap: Executing phase: 'cmake'
# ==> Error: NoHeadersError: Unable to locate python headers in any of these locations:
# /usr/include/python3.6m
# /usr/include/3.6
# /usr/Headers
#
# /opt/ohpc/admin/spack/0.19.2/var/spack/repos/builtin/packages/python/package.py:1325, in headers:
# 1322 else:
# 1323 raise spack.error.NoHeadersError(
# 1324 "Unable to locate {} headers in any of these locations:".format(self.name),
# >> 1325 "\n".join(candidates),
# 1326 )
# 1327
# 1328 headers.directories = [os.path.dirname(config_h)]
#
# See build log for details:
# /tmp/root/spack-stage/spack-stage-clingo-bootstrap-spack-svatlzarg3wjkzoxwocr5po5d4u3q4vl/spack-build-out.txt
#
# ==> Error: cannot bootstrap the "clingo" Python module from spec "clingo-bootstrap@spack+python %gcc target=aarch64" due to the following failures:
# github-actions-v0.4 raised timeout: The read operation timed out
# github-actions-v0.3 raised RuntimeError: download of binary cache file for spec "clingo-bootstrap@spack%gcc@10.2.1~docs~ipo+python+static_libstdcpp build_type=Release arch=linux-centos7-aarch64" failed
# spack-install raised InstallError: Terminating after first install failure: NoHeadersError: Unable to locate python headers in any of these locations:
# /usr/include/python3.6m
# /usr/include/3.6
# /usr/Headers
# Run `spack --debug ...` for more detailed errors
duration_ms: 1051.574
ok 4 [spack] test module refresh
duration_ms: 1.838